User: nicolas.hipp

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nicolas.hipp10
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New User
Location:
Rennes
Last seen:
1 year, 3 months ago
Joined:
1 year, 7 months ago
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n***********@univ-rennes1.fr

Posts by nicolas.hipp

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Issues with DEXSeq: rows did not converge in beta
... Hi, I'm trying to use DEXseq too, but I've got the same problem :// Did you solved it?  Thanks a lot, Nicolas ...
written 15 months ago by nicolas.hipp10
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Comment: C: DEXSeq throws a warning - rank-deficient matrix
... Hi, I'm trying to use DEXseq too, but I've got the same problem :// Did you solved it?  Thanks a lot, Nicolas   ...
written 15 months ago by nicolas.hipp10
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Comment: C: MasigPro and estimation of theta for negative binomial law
... Yep, I read that in the edgeR manual, if I understand well the coef=2:8 means that all the sample will be compare to 1 which is my T0 ? Effectively, I will have a look to cluster the gene with the same pattern of expression ;) And thanks for the theta explanation, I will help me to compare method ...
written 20 months ago by nicolas.hipp10
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Comment: C: MasigPro and estimation of theta for negative binomial law
... Hi,  Thanks for this answer, so I read it carefully but I'm still block to understand the calcul :/. They provide a function to estimate the common dispersion (for negative binomial), so I tried it on my data : y <- estimateDisp(y, design) An object of class "DGEList" $counts .. 37609 more ...
written 20 months ago by nicolas.hipp10
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Comment: A: MasigPro and estimation of theta for negative binomial law
... delete miss-localisation ...
written 20 months ago by nicolas.hipp10
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MasigPro and estimation of theta for negative binomial law
... Hi Bioconductor ! I have a time course RNAseq data from 8 time-points with 3 replicates per sample. These data were aligned with STAR, I get the featureCount output. With these file, I wan't to use MasigPro package to evaluate which genes are moving during this process. But I've got a problem with ...
rnaseq masigpro R edgr negative binomial model written 20 months ago by nicolas.hipp10

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