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Posts by srmaruyama
... Dear Gordon, The two logFC lists are different comparisons from the same data set. I have 3 groups, let's say A, B and C. My two lists are AvsB$table$logFC and BvsC$table$logFC and I used a gene set list (index) from MSigDB C3 collection (TFT transcription factor targets). What I observed is that, ...
... Dear All, To visualize my gene set enrichment analysis, I have been using $table$logFC from an object of class "DGELRT" as statistics argument together with two indices (index, index2). Now, I am interested in to visualize one index using two $table$logFC lists, to display a graph with the same plo ...
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