User: hihi.joshi

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Posts by hihi.joshi

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Answer: A: Ensembl transcripts returned by getBM not matching the biomart website
... Okay ... I just realised what I was doing incorrectly. Gene name and HGNC symbol are two distinctly different fields in the biomart dataset. I was retrieving hgnc_symbol via getBM and gene_name via Biomart web interface. Once I fixed the getBM to ensure the exact same fields are being retrieved, ...
written 22 months ago by hihi.joshi0
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Ensembl transcripts returned by getBM not matching the biomart website
... Hi,  I am writing a workflow to extract Ensembl transcripts using the getBM facility. This is a portion of the code. library(biomaRt) library(AnnotationHub) library(TxDb.Hsapiens.UCSC.hg19.knownGene) rm(list=ls()) ensembl_mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.o ...
biomart ensembl getbm transcripts written 22 months ago by hihi.joshi0

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Scholar 22 months ago, created an answer that has been accepted. For A: Ensembl transcripts returned by getBM not matching the biomart website

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