User: znl207

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znl2070
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Posts by znl207

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best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
... I would like your advice about normalization with cn.MOPs - as I understand cn.MOPs algorithm includes normalization to compare between different loci and across different samples. cn.MOPs also contains the "normalize genome" function to compare across samples. What is the difference between these t ...
normalization cn.mops written 9 weeks ago by znl2070 • updated 9 weeks ago by Günter Klambauer490
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Inconsistent Warning: GRanges out of bounds
... Hello: I am observing an error with cnMOPs and wondering if you have any recommendation to fix it. - let me know if I should be directing this message to someone else.  These are the commands I am running: CHR=c(chr01 chr02 chr03 chr04 chr05 chr06 chr07 chr08 chr09 chr10 chr11 chr12) BAMfiles < ...
cn.mops granges trim genomicranges-method written 3 months ago by znl2070

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