User: xiaotong.yao23

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Posts by xiaotong.yao23

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Comment: C: coverage() output SimpleRleList cannot be converted to GRanges
... Awesome, thanks! The "incompatibility between the new IRanges and GenomicRanges packages" was refering to the recent changes in both packages like the default `maxgap=-1` argument in `findOverlaps` and the suggested switch from `ranges` to `overlapRanges` method on `Hits` objects. I later read thro ...
written 10 days ago by xiaotong.yao230
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coverage() output SimpleRleList cannot be converted to GRanges
... Converting the SimpleRleList object to GRanges now does not work. Please advise the quickest fix. It probably has something to do with the seqlengths of the objects and the incompatibility between the new IRanges and GenomicRanges packages. > > segs GRanges object with 1794 ranges and 7 meta ...
coverage genomicranges granges bug rlelist written 12 days ago by xiaotong.yao230 • updated 11 days ago by Hervé Pagès ♦♦ 13k

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