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User: Deepali

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Posts by Deepali

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Comment: C: Normalise counts when tumour samples have normal tissue contamination.
... Thank you Dario. Fraction is not same in all samples. Yes you are right the fold change are appeared quite low.  ...
written 12 months ago by Deepali 0
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Comment: C: Normalise counts when tumour samples have normal tissue contamination.
... Thank you Michael. I can understand this is bit bizarre condition. I will just keep on normal normalisation method using both host and virus genes counts together.  ...
written 12 months ago by Deepali 0
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Normalise counts when tumour samples have normal tissue contamination.
... Hello, We have 4 control lung samples and 4 tumour lung samples of one mammalian species . In process of taking tumour tissues, the normal tissues are also taken (Don't ask, quite difficult process to take tumour sample from lung). We have virus counts in tumour samples (56500, 35440, 175788, 10119 ...
rnaseq edger deseq deseq2 htseqcounts written 12 months ago by Deepali 0

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