User: osieman52

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osieman520
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Posts by osieman52

<prev • 6 results • page 1 of 1 • next >
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Comment: C: fRMA results different for Windows and Linux
... Thanks alot, this seems to work! The reason why we can't just update to the newest R version is that alot of experiments are based on the older version and we find different results for different platforms(Linux vs Windows) as well as differences with old and new librarys(old fRMA vs new fRMA same ...
written 15 months ago by osieman520
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Comment: C: fRMA results different for Windows and Linux
... Unfortunately I don't have access to change the linux machine, but I did update the windows machine to the current version but I receive an error when I'm trying to use the frma library (that was the reason I went back to the older version on my windows machine) : `> library(frma)` Error: packag ...
written 15 months ago by osieman520
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fRMA results different for Windows and Linux
... Hi, When I apply fRMA on a dataset using a windows machine and a linux machine I find diffrences when I compare the expressions, Is this expected ,because the diffrences are not small. I am using more or less the same R versions and librarys.  windows:  R version 3.4.4 (2018-03-15) Platform: x86 ...
affy frma gene expression data expr written 15 months ago by osieman520 • updated 15 months ago by James W. MacDonald50k
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Comment: C: How to create vectors (makeVectorsAffyBatch) , using own cdf
... I see.what would you suggest me to do in order the fix this, because I would like the use this cdf since it has the probes I'm interested in. Is there a way to convert it in to a package so that `makeVectorsAffyBatch` can accept it or is there another way to do this. Thanks in advance! ...
written 17 months ago by osieman520
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How to create vectors (makeVectorsAffyBatch) , using own cdf
... Dear Matthew (or anyone that can help me), I am trying to create my own vectors using frmaTools. Therefore I am also using a custom cdf enviroment. But somehow I receive error's trying to create the vector. I'm sure that I use the "cdfname" the wrong way but can't find any examples on how to use it ...
altcdfenvs frmatools affymetrix microarrays written 17 months ago by osieman520 • updated 17 months ago by Matthew McCall830
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Comment: C: CEL files not valid?
... I have the same error but I can't seem to fix the problem. Can you help me out please? ...
written 18 months ago by osieman520

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