User: dusan.petrovic

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Posts by dusan.petrovic

<prev • 5 results • page 1 of 1 • next >
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Answer: A: How to annotate gene ontologies based on Gene Symbols in R
... Awesome James, your first response was exactly what I wanted Thank you so much ...
written 16 months ago by dusan.petrovic0
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How to annotate gene ontologies based on Gene Symbols in R
... Hello Everyone, I am looking for a straightforward way for associating gene ontologies (GO:...) to gene symbols (i.e. EIF1AY). I tried to use the GO.db package, but the latter does not seem to contain gene symbols, only gene ontologies   Thank you for your kind help ...
annotate go.db written 16 months ago by dusan.petrovic0
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Using topGO for GO Enrichment on methylation markers (Illumina 450k)
... Hi everyone, I am currently performing an analysis for highlighting cpg markers that are differentially methylated (Illumina 450K) by using the lme4 package.I would now like to perform a Gene Ontology Enrichment by using the TopGO package, but I am having some difficulties.  I am trying to apply t ...
topgo illuminahumanmethylation450k.db written 16 months ago by dusan.petrovic0
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Answer: A: How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code
... Hi James, Thank you for your reply, I switched to topGO following your advice. Best    Dusan   ...
written 16 months ago by dusan.petrovic0
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How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
... Hello everyone, I am new to this forum so I'm apologizing in advance if I am not posting in the most formal way. I am using the goseq package from bioconductor in order to perform enrichment for markers that are differentially methylated (limma output). These markers have been measured  according ...
limma goseq methylation ensembl ucsc written 17 months ago by dusan.petrovic0

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