Admin: Martin Morgan

gravatar for Martin Morgan
Martin Morgan ♦♦ 21k
Reputation:
21,040
Status:
Trusted
Location:
United States
Website:
http://bioconductor.org/
Last seen:
10 hours ago
Joined:
12 years, 5 months ago
Email:
m************@roswellpark.org

Posts by Martin Morgan

<prev • 2,769 results • page 1 of 277 • next >
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Answer: A: Fast callback functions for scanTabix?
... My approach would chunk through the tabix in memory-sized components -- 10M lines? -- processing these in a vectorized way. A secondary approach would chunk through and then call C on the chunk. GenomicFiles::reduceByYield may provide the necessary iteration (possibly in parallel) infrastructure. ...
written 1 day ago by Martin Morgan ♦♦ 21k
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Comment: C: Hotels for BioC 2018?
... I've updated the web site: University of Victoria on the Downtown campus. ...
written 1 day ago by Martin Morgan ♦♦ 21k
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Answer: A: Hotels for BioC 2018?
... We have not reserved any room blocks for participants this year; you're own your own! ...
written 1 day ago by Martin Morgan ♦♦ 21k
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Answer: A: Please help to address the BiocCheck NOTEs
... Please ask questions about package development on the bioc-devel mailing list. ...
written 1 day ago by Martin Morgan ♦♦ 21k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
... Wow! That's amazing! I ended with > z$analysis$metadata$read_groups %>% bind_rows() %>% as_tibble() # A tibble: 4,408 x 18 library_name is_paired_end library_strategy updated_datetime <chr> <lgl> <chr> <chr> ...
written 2 days ago by Martin Morgan ♦♦ 21k
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Comment: C: ReportingTools Segmentation fault
... This looks a lot like this report, superficially a rogue finalizer from Rcpp but it could be almost anything, and the complexity of the package dependencies makes this hard to track down. The original poster could have fun by installing and then trying to catch the segfault R -d valgrind -e "libra ...
written 2 days ago by Martin Morgan ♦♦ 21k
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Comment: C: Prostar and DAPAR installation
... DO.db is available for R-3.4.4 / Bioc 3.5; what happens when you say biocLite("DO.db") ...
written 6 days ago by Martin Morgan ♦♦ 21k
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Answer: A: Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not ins
... I think you mean install_github("package_name", INSTALL_opts="no-multiarch") ? The same syntax is supported by biocLite("org.Hs.eg.db", INSTALL_opts="no-multiarch"). Both install_github() and biocLite() are wrappers around install.packages(), and forward arguments there. ` ...
written 6 days ago by Martin Morgan ♦♦ 21k
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Comment: C: installation of Biocunductor packages in My home directory.
... This looks like a problem with RCurl; does library(RCurl) work for you? ...
written 6 days ago by Martin Morgan ♦♦ 21k
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Comment: C: Error biocLite() newest version of ChAMP
... Is your script complete? It looks like the segfault occurs in R, before any package is downloaded. ...
written 6 days ago by Martin Morgan ♦♦ 21k

Latest awards to Martin Morgan

Scholar 9 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Scholar 10 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Scholar 10 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Scholar 10 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 10 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 11 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Appreciated 11 months ago, created a post with more than 5 votes. For Statistics and Computing in Genome Science (CSAMA) Course Material
Scholar 11 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 11 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 12 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Appreciated 12 months ago, created a post with more than 5 votes. For BioC 2015 Annual Conference
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 12 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 12 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 12 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Good Answer 13 months ago, created an answer that was upvoted at least 5 times. For A: Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Appreciated 13 months ago, created a post with more than 5 votes. For BioC 2015 Annual Conference
Scholar 13 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 13 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 13 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 14 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()

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