Admin: Martin Morgan

gravatar for Martin Morgan
Martin Morgan ♦♦ 19k
Reputation:
19,080
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Trusted
Location:
United States
Website:
http://bioconductor.org/
Last seen:
an hour ago
Joined:
11 years, 4 months ago
Email:
m************@roswellpark.org

Posts by Martin Morgan

<prev • 2,389 results • page 1 of 239 • next >
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Comment: C: How to update a package I author on Bioconductor?
... Also as a package developer your questions should be directed to the bioc-devel mailing list. ...
written 2 days ago by Martin Morgan ♦♦ 19k
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Comment: C: DESeq2 download errors R3.3.3 OS10.5.5
... Probably you could try to install RCurl biocLite("RCurl") On Linux, you'd have to install the system dependency libcurl-dev, but it seems like you're on a Mac. ...
written 8 days ago by Martin Morgan ♦♦ 19k
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Comment: C: DESeq2 download errors R3.3.3 OS10.5.5
... The package is GenomeInfoDb. ...
written 8 days ago by Martin Morgan ♦♦ 19k
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Comment: C: EBImage / problem in running the code via Rscript
... Yes it seems like an upstream issue and the abind maintainer should fix it, rather than trying to come up with work-arounds down-stream. ...
written 9 days ago by Martin Morgan ♦♦ 19k
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Comment: C: how to transform a list of IRanges into a RangesList instance
... The  GenomicRanges vignettes are also relevant to IRanges. One might also look at conference presentations, especially last year and other course material. ...
written 9 days ago by Martin Morgan ♦♦ 19k
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Answer: A: EBImage / problem in running the code via Rscript
... I think a work-around is to add  library(methods) to your script. What is the output of sessionInfo() ? ...
written 9 days ago by Martin Morgan ♦♦ 19k
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Answer: A: DESeq2 download errors R3.3.3 OS10.5.5
... It seems like you are pointing to a no-longer-valid CRAN mirror. Try chooseCRANmirror() and select "0-cloud", or set options(repos="https://cloud.r-project.org"). ...
written 9 days ago by Martin Morgan ♦♦ 19k
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Comment: C: how to transform a list of IRanges into a RangesList instance
... The as() function call looks for coerce() methods, so ?"coerce,list,RangesList". Many things in that last sentence are not obvious. ...
written 10 days ago by Martin Morgan ♦♦ 19k
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Answer: A: Error using biocLite
... Provide the full transcript -- Does source("https://bioconductor.org/biocLite.R") work? What about using http:// instead of https://? options(BioC_mirror="http://bioconductor.org") biocLite("org.Hs.eg.db") ...
written 10 days ago by Martin Morgan ♦♦ 19k
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News: BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
... Join us for our annual conference! Dates: July 26 (Developer Day) - 28 Location: Dana-Farber Cancer Institute, Boston, MA, USA Registration: now open. Scholarships available. More information: https://bioconductor.org/BioC2017 The main conference (27 - 28 July) consists of morning scientific talks ...
news conference bioc2017 written 14 days ago by Martin Morgan ♦♦ 19k

Latest awards to Martin Morgan

Good Answer 14 days ago, created an answer that was upvoted at least 5 times. For A: Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Appreciated 14 days ago, created a post with more than 5 votes. For BioC 2015 Annual Conference
Scholar 15 days ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 18 days ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Teacher 24 days ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 25 days ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 7 weeks ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: about filtering variants in a VCF file
Teacher 11 months ago, created an answer with at least 3 up-votes. For C: Cannot install CummeRbund on R v.3.3.0
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to access Emsembl plants with biomaRt
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: finding overlapping regions within 2 different bed files with different features
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Load balancing using BiocParallel
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: bplapply stalling upon error with large data objects
Scholar 11 months ago, created an answer that has been accepted. For A: Submitting an experimental data package
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Offline loading of BiocInstaller or depending packages and connection timeout
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: getting the longest transcript by gene from Refseq
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Codelink annotation error in Ubuntu 16.04
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to convert a GRangesList object into a GRanges object?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: IRanges, Partitioning by End function not found.
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Filtering a BAM file using RSamtools
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Any way to proceed duplicate removal for list of GRanges object ?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Plotting only intergenic reads on chromosomes?
Scholar 11 months ago, created an answer that has been accepted. For A: scanBam on BamSampler supposed to be fast?

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