Admin: Martin Morgan

gravatar for Martin Morgan
Martin Morgan ♦♦ 22k
Reputation:
22,260
Status:
Trusted
Location:
United States
Website:
http://bioconductor.org/
Last seen:
2 hours ago
Joined:
13 years ago
Email:
m************@gmail.com

Posts by Martin Morgan

<prev • 3,021 results • page 1 of 303 • next >
0
votes
1
answers
28
views
1
answers
Answer: A: problem in loading Deseq2
... I would guess that your your S4Vectors library is partly removed, probably because an update was attempted when another session was using it. Make sure you have no R sessions running. Use the system file manager to manually remove the S4Vectors directory at C:/Program Files/R/R-3.5.1/library/S4Vecto ...
written 3 days ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
51
views
0
answers
Comment: C: How to clear a cached S4 method
... I think the cache is created when a package imports a method, so the problem is that one or more of your packages was installed before the method was updated. The solution is to re-install the package(s) with stale cached methods; the challenge is to find out what those are... ...
written 5 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answers
99
views
1
answers
Answer: A: Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc
... Minor speculation but (a) R will not be using a system tar and (b) are spaces in the user name 'Lieber Institute' a problem? Can the latter be overcome with an alias of some kind? ...
written 9 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answers
35
views
1
answers
Answer: A: Calling a package specific function in a for loop
... Try using print(plotProportions(...)). ...
written 10 days ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
46
views
0
answers
Comment: C: Rsubread installation failed
... Rsubread is not supported on standard Windows installations (e.g., on the package landing page there is no 'windows binary' listed), so the 'other way' is to use a different operating system, unfortunately. ...
written 10 days ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
127
views
2
answers
Comment: C: DESeq2 - Upgrade from 1.20.0 to 1.22.1 now gives warnings 'package:stats' may no
... Either solution (upgrade or set the argument) should work; 1.16.1 is available now via BiocManager::install("BiocParallel"). ...
written 12 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answers
48
views
1
answers
Answer: A: Error when install bioconductor on Mac 10.12 Sierra
... Your version of R is too old for BiocManager; you'll want to use source("https://bioconductor.org/biocLite.R") biocLite("YourPackage")   ...
written 13 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answers
61
views
1
answers
Comment: C: Problem with Upgrade to Bioconductor 3.8 on Scientific linux (CentOS) 7
... You cut out the most informative part of the installation (the c++ compilation step) but the problem is that your system (not R) has an incompatibility --- the libstdc++ library, installed on your system, cannot find the CXXABI version that your system advertised as available. Likely the solution is ...
written 13 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answers
61
views
1
answers
Answer: A: Problem with Upgrade to Bioconductor 3.8 on Scientific linux (CentOS) 7
... There are no intentional restrictions on OS use. I would guess that you updated your system after updating R, and the location R found GLIBCXX_3.4.20 is different from where it resides now. Also it is usually helpful to simplify the installation to the first package that fails to install rather than ...
written 13 days ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
127
views
2
answers
Answer: A: DESeq2 - Upgrade from 1.20.0 to 1.22.1 now gives warnings 'package:stats' may no
... This seems to be a complicated side-effect of a change to BiocParallel, where each param has a exportGlobals = option; set this to FALSE to avoid the warning, e.g., register(MulticoreParam(exportGlobals = FALSE)) UPDATE: a patched version should be available as BiocParallel 1.16.1 (Release 3.8) o ...
written 14 days ago by Martin Morgan ♦♦ 22k

Latest awards to Martin Morgan

Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs
Scholar 5 weeks ago, created an answer that has been accepted. For A: Difficulty extending ExpressionSet
Scholar 5 weeks ago, created an answer that has been accepted. For A: Is BiocInstaller::biocLite incompatible with withr::with_makevars?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 9 weeks ago, created an answer that has been accepted. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 9 weeks ago, created an answer that has been accepted. For A: Is BiocInstaller::biocLite incompatible with withr::with_makevars?
Scholar 9 weeks ago, created an answer that has been accepted. For A: Difficulty extending ExpressionSet
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 4 months ago, created an answer that has been accepted. For A: Difficulty extending ExpressionSet
Popular Question 6 months ago, created a question with more than 1,000 views. For Updated Bioconductor Package Submission Policy
Scholar 6 months ago, created an answer that has been accepted. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Popular Question 6 months ago, created a question with more than 1,000 views. For BioC 2015 Annual Conference
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 6 months ago, created an answer that has been accepted. For A: How to get chip information from annotation databases
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Scholar 6 months ago, created an answer that has been accepted. For A: Difficulty extending ExpressionSet
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs
Scholar 6 months ago, created an answer that has been accepted. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Eliminating repetitive calls to ExperimentHub
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 6 months ago, created an answer that has been accepted. For A: How to get chip information from annotation databases
Scholar 17 months ago, created an answer that has been accepted. For A: about filtering variants in a VCF file
Scholar 17 months ago, created an answer that has been accepted. For A: How to initialize a SummarizedExperiment?
Scholar 17 months ago, created an answer that has been accepted. For A: Extracting sequences from BSgenomeViews object

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 255 users visited in the last hour