User: lolli.langan

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lolli.langan20
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Posts by lolli.langan

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Running GO analysis via Prostar
... Hi Sam I'm having two very differnt problems dependent on which system i work on. In the first instance, i have ran the analysis on my personal MAC and while the biocLite package is recognised via the Prostar gui, the annotation package i have built via the annotationForge package (my organism is c ...
written 15 months ago by lolli.langan20
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Running GO analysis via Prostar
... I recently upgraded to the new Prostar (for proteomics analysis). Within the gene ontology analysis, it was possible to use genome wide annotation packages you had already installed or at least they were available/searchable during analysis to link up GO numbers etc. This does not appear to be the ...
proteomics annotationforge rforproteomics prostar written 15 months ago by lolli.langan20 • updated 15 months ago by Samuel Wieczorek0
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Comment: C: Adding annotation to MSnSet
... Thank you so much!!! This worked beautifully and gave me all the information that is required for some downstream analysis. I've never come across anything that alludes to this. Its so simply and yet brilliant.  ...
written 18 months ago by lolli.langan20
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Comment: C: Adding annotation to MSnSet
... Sorry for the vagueness of my answer. This is extremely new to me. I can confirm that i did download some annotations from the uniprot website but they are not as informative as i would like.  I'm unsure of how to add the code i ran so i have just added it in text here. I've been trawling through t ...
written 18 months ago by lolli.langan20 • updated 18 months ago by Laurent Gatto1.2k
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Adding annotation to MSnSet
... I've analysed shotgun proteomics data using MSGFplus, MSnBase and MSnID. I now have a final combined MSnExp. When running MSGFplus, I used uniprot data which brings in accession numbers etc. Seperatly, i've used uniprot to download EntrezID, symbol and gene names and i would like to connect the two. ...
proteomics bioconductor msnset written 18 months ago by lolli.langan20 • updated 18 months ago by Laurent Gatto1.2k

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