User: marija.durdevic

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Posts by marija.durdevic

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Comment: C: DEXSeq - dexseq_count.py issue
... Yes, I am using dexseq_count.py: dexseq_count.py -f bam -p yes -s reverse -a 10 -r pos my_gtf_file.gtf data.bam output Thanks for your help. Best, Marija ...
written 14 months ago by marija.durdevic0
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Comment: C: DEXSeq - dexseq_count.py issue
... Sure! That's my original gtf file and this is file after DEXSeq prepare.   Thanks, Marija ...
written 15 months ago by marija.durdevic0
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Comment: C: DEXSeq - dexseq_count.py issue
... Sure & thanks for your help :) Seqname Source Feature Start End Score Strand Frame Attributes AERX01071043.1 dexseq_prepare_annotation.py aggregate_gene 8384 9414 . - . gene_id "MSTRG.1" AERX01071043.1 dexseq_prep ...
written 15 months ago by marija.durdevic0
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Comment: C: DEXSeq - dexseq_count.py issue
... Hi Alejandro, It's Python 3.6.4. I installed DEXSeq over conda. Could that be the problem? Thanks, Marija   ...
written 15 months ago by marija.durdevic0
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DEXSeq - dexseq_count.py issue
... Hi all, I wanted to use dexseq_count for quantification, but I got strange error: Fatal error: Exit code 1 () Traceback (most recent call last): File "dexseq_count.py", line 102, in features[f.iv] += f File "python3/src/HTSeq/_HTSeq.pyx", line 451, in HTSeq._HTSeq.ChromVector.__iadd__ ...
genomicfeatures dexseq dexseq_count written 15 months ago by marija.durdevic0 • updated 14 months ago by hazards0

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