User: TB18

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TB180
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Posts by TB18

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GOseq output but strange warning message!
...   Dear all, I am running GOseq on a custom annotated dataset. I am getting a nicely looking output: list of enriched and depleted GOterms for my different groups, just as I want. But after calculating pwf I get the following warning message: > pwf=nullp(cat_genes_vec,bias.data=lengths_feature ...
go goseq pwf written 3 months ago by TB180
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GO.db: searching for "top" GO term for list of terms
... Dear all, I am currently working with a list of GO terms linked to gene ID's. For completeness like so, but then for 100s of genes: GENE1 GO:xxxx GO:xxxxx GO:xxxxx Because I want to group my genes into 'biological-logical' groups like: development, digestion, metabolition etc. I was thinking to ...
go go.db written 3 months ago by TB180 • updated 3 months ago by James W. MacDonald48k
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Comment: C: Problems with the correct installation of GOseq
... Perhaps worthwhile to mention. If I just try to load GO.db I get the following error message (related to the issue above): > library(GO.db) Error: package or namespace load failed for ‘GO.db’:  .onLoad failed in loadNamespace() for 'GO.db', details:   call: NULL   error: C stack usage  7970192 i ...
written 9 months ago by TB180
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Comment: C: Problems with the correct installation of GOseq
... Ah! Forgot to mention. Yes, I updated the versions I'm using: > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help and R: version.string R version 3.4.3 (2017-11-30) ...
written 9 months ago by TB180
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Problems with the correct installation of GOseq
... Dear community, I have great difficulty in installing the package 'GOseq', I searched google for similar issues but all seem not applicable for me or result in the same error. At first I tried installing: ## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite ...
go written 9 months ago by TB180 • updated 9 months ago by stephenhawking6160

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