User: mario.zanfardino

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New User
Location:
Naples (Italy)
Last seen:
3 months ago
Joined:
3 months ago
Email:
m***************@gmail.com

I'm a Bioinformatician. For details go to:

https://www.linkedin.com/in/mario-zanfardino-0b94734b/

Posts by mario.zanfardino

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Is there a data package containing complex RNA-Seq data?
... have a look at TCGA database. You can access data by multiple modalities. One of these is based on curatedTCGAData package. For example: library("curatedTCGAData") # Downolad "RNASeqGene" BRCA cancer data BRCA_TCGA <- curatedTCGAData(diseaseCode = "BRCA", ...
written 3 months ago by mario.zanfardino10
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Answer: A: Can i add an experiment to an existing MultiAssayExperiment?
... Thank you Marcel, An example solution based on your post:   # Create a new summarizedExperiment example nrows <- 20 ncols <- 5 counts <- matrix(runif(nrows * ncols, 1, 1e4), nrows) colData <- DataFrame(f1=c(runif(5, 0, 100)), f2=c(sample(0:1, 5, replace=T)), ...
written 3 months ago by mario.zanfardino10
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Answer: A: unable to install "variant"
... Try to re-install libxml2: brew update brew uninstall libxml2 brew install libxml2 --with-xml2-config   ...
written 3 months ago by mario.zanfardino10
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Can i add an experiment to an existing MultiAssayExperiment?
... Hi, There are methods to add, to an existing MultiassayExperiment data structure, a new experiment? I have a multiassayExperiment created by curatedTCGAdata with  "BRCA_Mutation-20160128", "BRCA_CNASNP-20160128" and "BRCA_RNASeqGene-20160128" in the ExperimentList. I would add a new experiment in th ...
tcga mutiassayexperiment tcia written 3 months ago by mario.zanfardino10

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