User: mario.zanfardino

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I'm a Bioinformatician. For details go to:

https://www.linkedin.com/in/mario-zanfardino-0b94734b/

Posts by mario.zanfardino

<prev • 34 results • page 1 of 4 • next >
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Comment: C: MultiAssayExperiment:combine two multiassayexperiment object
... Thank you very much Marcel! ...
written 10 days ago by mario.zanfardino120
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MultiAssayExperiment:combine two multiassayexperiment object
... how can i combine two multiassayexperiment object without using Experiment extraction and subsequently combination in MAE? Example:  > MAE1 A MultiAssayExperiment object of 2 listed experiments with user-defined names and respective classes. Containing an ExperimentList class object of leng ...
multiassayexperiment written 12 days ago by mario.zanfardino120 • updated 10 days ago by Marcel Ramos ♦♦ 290
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... Thank you, now runs! ...
written 13 days ago by mario.zanfardino120
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... Thank you very much Marcel! i have 1.6.0 version of MAE. But If i run: source("https://bioconductor.org/biocLite.R") BiocInstaller::biocLite("MultiAssayExperiment") no update is detected. ...
written 13 days ago by mario.zanfardino120
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... No, i don't have renamed experimet. i have added the experiment using my variable sa <- "exp_3". After this i have the followig MAE: > mae2 A MultiAssayExperiment object of 8 listed experiments with user-defined names and respective classes. Containing an ExperimentList class object of le ...
written 16 days ago by mario.zanfardino120
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... ops! this solution produce this error when i try to generate wideFormat: > wideFormat(mae2[ , , c("exp_3")] Error: subscript contains invalid rownames Any idea? ...
written 16 days ago by mario.zanfardino120
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... Ok, resolved! mae2 <- BRCA_TCGA_plus@ExperimentList[[sa]] <- se ...
written 16 days ago by mario.zanfardino120
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Comment: C: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... I don't know! in my case i need to assign a value of a variable as name of a MAE experiment (in the MAE creating phase). But it does not seem possible and then i would like rename in a second phase.   mae2 <- c(BRCA_TCGA_plus, sa=se) sa is a variable: sa <- "exp_3" and i want: mae2 & ...
written 16 days ago by mario.zanfardino120
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MultiAssayExperiment: how can i change name of a experiment in a multiassayexperiment object?
... I have this MAE:  > mae2 A MultiAssayExperiment object of 5 listed experiments with user-defined names and respective classes. Containing an ExperimentList class object of length 5: [1] BRCA_miRNASeqGene-20160128: SummarizedExperiment with 1046 rows and 849 columns [2] BRCA_RNASeqGene-20 ...
multiassayexperiment written 16 days ago by mario.zanfardino120 • updated 15 days ago by Marcel Ramos ♦♦ 290
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Comment: C: Download TCGA dataset like a S4 object
... df <- as.data.frame(wideFormat(SKCM[1:10,1:10 ,"SKCM_Methylation-20160128"], colDataCols = c(1:10))) df subsetted for 10 Patient, 10 features and 10 colData ...
written 7 weeks ago by mario.zanfardino120

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