User: James Wettenhall

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Posts by James Wettenhall

<prev • 99 results • page 1 of 10 • next >
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Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
... [PLEASE REPLY _OFF_ THE LIST, i.e. DON'T CC to bioconductor at ...] Hi, I don't see this sort of thing very often on the mailing lists, so list moderators and others should feel free to tell me if it breaches list etiquette and/or delete my post if necessary. But I can't see what harm it could do ...
affylmgui limmagui written 13.3 years ago by James Wettenhall1000
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Comment: C: LIMMA No residual using rmaPLM
... Hi, Summary: When running a short course recently at the JSM in Minneapolis: http://bioinf.wehi.edu.au/marray/jsm2005/ we created an installation bundle which may be of interest to Windows users (particularly if you know someone who doesn't yet have R installed and wants to get started with BioC et ...
written 13.7 years ago by James Wettenhall1000
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Answer: A: tkrplot-error-help
... Hi, If install.packages("tkrplot") doesn't work, then don't worry about it - you don't really need it. If you have the latest version of limmaGUI (or affylmGUI), you can just use the regular R graphics device (e.g. Quartz if you are using a Mac) instead of tkrplot. See the "Options" at the bottom ...
written 14.1 years ago by James Wettenhall1000
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Re: [Bioc-devel] Error in mget(ls(cdfenv), env = rgu34aGENENAME) : Object "rgu34aGENENAME" not found
... Hi Marcin, Sorry for the late reply. There have been some problems with the MetaData packages on the Bioconductor site recently (for Windows users), including the annotation packages (which is how affylmGUI finds out the names of genes). I believe they have been resolved now. So hopefully you wi ...
annotation go affylmgui written 14.2 years ago by James Wettenhall1000
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Answer: A: affylmGUI error when normalizing
... Hi, > Here is an error I get when running affylmGUI (and attempting RMA > normalization). The errors are listed below. > I am running R 1.9.1 on a Windows XP machine. I downloaded the As pointed out already, R 1.9.1 is a bit old now. It is best to use 2.0.1 (or later). One reason why pe ...
written 14.3 years ago by James Wettenhall1000
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Comment: C: Two bioinformatics conferences in Sydney in July
... Hi Byron and others, > If they're using the R GUI the Bioconductor Binary packages should be > available directly from the "Package Installer..." sheet since AFAIK > Stefano builds them along with the other CRAN packages. I'd check, but > unfortunately my R GUI crashes (its a -devel bra ...
written 14.4 years ago by James Wettenhall1000
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Answer: A: Two bioinformatics conferences in Sydney in July
... Hi, I am a Windows/Linux user but have lots of biology clients who are Mac users. They generally don't have the Developer Tools installed, so what is the best way for me to help them to install a package like "affy" which has C source code? Does anyone provide Mac binaries for commonly used Bioco ...
written 14.4 years ago by James Wettenhall1000
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Answer: A: problem in limmaGUI with Heat Diagram
... Hi Bas, This problem with the heat diagram plot in limmaGUI has been fixed in version 1.3.7, available at http://bioinf.wehi.edu.au/limmaGUI/ (not yet on Bioconductor). The horizontal and vertical dimensions of the tkrplot images are determined when limmaGUI begins depending on various things (op ...
written 14.4 years ago by James Wettenhall1000
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Comment: C: ecoli2cdf
... Hi, What version of limmaGUI are you using? Agilent format should be available as an option. limmaGUI tries to guess the data format based on the file extension and uses this guess to define the default radio button selection in the dialog, but then the user is responsible for selecting the corre ...
written 14.5 years ago by James Wettenhall1000
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Answer: A: tkrplot in R2.0 on Mac OS X
... Hi Rahul, I have found tkrplot to be a little tricky to build from source on MacOS X. The reasons for using tkrplot in limmaGUI and affylmGUI were actually only relevant to the Windows operating system when using the MDI (Multiple Document Interface) for R, (avoiding R graphics device and Tk windo ...
written 14.5 years ago by James Wettenhall1000

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