User: Gon Nido

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Gon Nido0
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Posts by Gon Nido

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Comment: C: Collapsing transcript counts into pathways / gene lists with DESeq2
... Thank you for the input Michael. I understand that if the genes change expression in different directions, the pathway will not be "differentially expressed". I thought, however, this would be analogous to two transcript ids mapped to the same gene whose expressions change in opposite directions (ag ...
written 20 months ago by Gon Nido0
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Collapsing transcript counts into pathways / gene lists with DESeq2
... Hi, I've been using the DESeq2 package lately with tximport to import the counts generated by Salmon. I wanted to do some pathway analysis and I used tximport with the tx2gene argument set to a mapping between transcript ids and pathway name. > head(pw_txdb) TXNAME p ...
deseq2 pathway analysis tximport written 20 months ago by Gon Nido0 • updated 20 months ago by Michael Love26k

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