User: Gon Nido
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Posts by Gon Nido
... Thank you for the input Michael. I understand that if the genes change expression in different directions, the pathway will not be "differentially expressed". I thought, however, this would be analogous to two transcript ids mapped to the same gene whose expressions change in opposite directions (ag ...
... Hi, I've been using the DESeq2 package lately with tximport to import the counts generated by Salmon. I wanted to do some pathway analysis and I used tximport with the tx2gene argument set to a mapping between transcript ids and pathway name. > head(pw_txdb) TXNAME p ...
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