User: heir_of_isildur88

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Posts by heir_of_isildur88

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Error Installing Cluster Profiler
... Hi all, I was trying to install clusterProfiler in my R Studio but I was unable to do it. As I am using my institute's server, I have only local access. The command I used to install is:  biocLite("clusterProfiler", lib = "~/R/3.4/clusterProfiler") The error I got is: *** installing help indic ...
clusterprofiler installation problem written 13 months ago by heir_of_isildur880
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Answer: A: Font size plotGOgraph
... You can try changing graphical parameter function using  par(cex = 0.5) The size of the font is inversely proportional to the cex value in this case.  ...
written 15 months ago by heir_of_isildur880
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Comment: C: p-values in Reactome and ReactomePA
... So which set of pathways should I actually use as my result? The ones found using the adjusted p-value or the one without? I am still confused about this p-value thing and the difference between the web Reactome and your ReactomePA package. What is the difference in the method of p-value calculatio ...
written 15 months ago by heir_of_isildur880
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p-values in Reactome and ReactomePA
... Hi all, I am using Reactome for GO / Pathway Enrichment analysis for my set of DE genes. Besides the web interface, I am also using the ReactomePA R package for the analysis. I am confused with the settings & p-values for these 2. 1) In the Reactome web interface, the results show an entities ...
reactome reactomepa written 15 months ago by heir_of_isildur880 • updated 15 months ago by Guangchuang Yu1.1k
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Which GO is used for clusterProfiler?
... Hi, I am new to clusterProfiler and I wanted to know which GO database was used for the profiling.  Previously I was using Reactome and also ReactomePA, but I wanted to try this out.  Is the GO database for clusterProfiler from the Gene Ontology Consortium? Sorry if this sounds like a silly ques ...
clusterprofiler written 15 months ago by heir_of_isildur880

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