User: dmm204

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dmm2040
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Posts by dmm204

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Limma Volcano Plot Highlight Top Genes by Color
... Hi Everyone,  I am trying to highlight (by change of color) the top DEG in my volcano plot from differential expression analysis using the limma package. However, the codes that I am using, change all of the points, instead of just the highlighted points, in the plot to the indicated color.  Can an ...
microarray limma volcanoplot color written 14 months ago by dmm2040 • updated 14 months ago by Gordon Smyth39k
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Answer: A: Error when Creating Expression Set from Geo Set
... Thanks for the response, James! That all makes sense - I am new to r and the package, GEOQuery, so at first I wasn't sure what the output meant, but taking a closer look I see that the Expression set was created. Thank you again for the advice!  ...
written 20 months ago by dmm2040
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Error when Creating Expression Set from Geo Set
... Hello!  I am currently using the Geoquery package to analyze a Geo dataset. I was successfully able to download the series matrix, but receive an error message when creating an expression set from the data. Below, is the error I receive. Any help would be appreciated to help fix the error.  gse111 ...
geoquery written 20 months ago by dmm2040

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