User: soheilazareie

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Canada, Vancouver, University of British Columbia
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Posts by soheilazareie

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Comment: C: BAM file into R from Illumina
... thanks, but how it will detect the URL (I mean the exact path), in this code? ...
written 4 weeks ago by soheilazareie0
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BAM file into R from Illumina
... I have 49 bam files aligned by STAR through Illumina and just wondering if there is any way to export BAM files from illumina without downloading, for example into R, if someone helps me to understand how to load my files into a single read table through summarizeOverlaps I would really appreciate. ...
illumina star bam file written 5 weeks ago by soheilazareie0 • updated 5 weeks ago by ta_awwad10
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Comment: C: colData and design problem
... Thanks for the reply. here is one of the errors, Error in `rownames<-`(`*tmp*`, value = colnames(countData)) :    attempt to set 'rownames' on an object with no dimensions However, it looks like the above code now is working, but the other problem that I have had is this code: plotMA (DGE.res ...
written 6 weeks ago by soheilazareie0
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colData and design problem
... Hello, I would really appreciate if someone helps me understand my code better, I need help with writing design formulas/matrix is my coldata correct?...  I have 35 samples. Two different type of cell lines (which 2 or 3 of them have technical replicates as well) + control.  ac=15, dc=16, contr ...
deseq2 written 6 weeks ago by soheilazareie0

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