User: Nik dAK

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Nik dAK10
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1 year, 1 month ago
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n********************@yahoo.com

Posts by Nik dAK

<prev • 6 results • page 1 of 1 • next >
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Gviz (GenomicInteractions) arc height and boundaries
... Hi everybody, I am currently start working with Gviz (thanks for the amazing package), but have a small issue with the interaction track: I use makeGenomicInteractionsFromFile() and InteractionTrack() on a bedpe file. Everything works fine, but the arcs are squeezed against the top border (see ima ...
gviz genomicinteractions written 18 days ago by Nik dAK10 • updated 14 days ago by liz.ingsimmons120
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Comment: C: Rsamtools v 1.99.6 installation error
... Also works for me, thank you very much! ...
written 21 days ago by Nik dAK10
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Comment: C: Rsamtools v 1.99.6 installation error
... scPipe without rtracklayer also works perfectly for me. here is my output of ldd Rsamtools.so after the failed installation: https://pastebin.com/PN3Lmmbv Thanks! ...
written 22 days ago by Nik dAK10
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Comment: C: Rsamtools v 1.99.6 installation error
... you can find my full logs here: https://pastebin.com/fNw41s80 ...
written 22 days ago by Nik dAK10
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Comment: C: Rsamtools v 1.99.6 installation error
... Having the same issue. > BiocManager::install("Rsamtools") Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.0 (2019-04-26) ... (some warnings but should be fine) installing to /home/rad/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-Rsamtools/00new/Rsamtools/libs ** R ** ...
written 23 days ago by Nik dAK10
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rtracklayer::liftOver parameters (minMatch)
... I have a question regarding the parameters available at the command line version but not in R. Is there a possibility to for example alter the minMatch value (Minimum ratio of bases that must remap)? Apparently this value adapts automatically from 0.95 default to 0.1 when using a chain for differe ...
rtracklayer parameters liftover minmatch written 13 months ago by Nik dAK10 • updated 13 months ago by Michael Lawrence11k

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