User: RJ

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RJ10
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Posts by RJ

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Comment: C: makeTxDbFromUCSC("hg19", "refGene") gives "not supported" error
... This is Great! Thanks a lot for your help!  ...
written 6 days ago by RJ10
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Answer: A: makeTxDbFromUCSC("hg19", "refGene") gives "not supported" error
... This is a bit strange, because I have confirmed the refGene is still in UCSC by using: browseUCSCtrack("hg19", "refGene")   Any other alternative ways I can get the annotation/GTF/GFF3 of refGene in hg19?     ...
written 6 days ago by RJ10
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makeTxDbFromUCSC("hg19", "refGene") gives "not supported" error
... Hi, It seems 'makeTxDbFromUCSC' currently cannot load refGene in hg19. Could you help me to fix this? Here's what I did: > txdb <- makeTxDbFromUCSC(genome="hg19", tablename="refGene") Error in .tablename2track(tablename, session) :    UCSC table "refGene" is not supported   I have confirme ...
genomicfeatures written 8 days ago by RJ10 • updated 6 days ago by James W. MacDonald46k

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