User: harry.horsnell.17

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Posts by harry.horsnell.17

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Generating RPKM data from dds (DESeq2 pipeline)
... Dear all, I have just generated my  DESeqDataSet and I am curious about how I can generate RPKM data from this dds <- DESeqDataSet(se, design = ~ Cell + Hour ) I am quite new to the DESeq2 workflow so any suggestions will be much appreciated  Many thanks, Harry Horsnell ...
deseq2 rpkm dds written 17 months ago by harry.horsnell.170 • updated 17 months ago by Michael Love25k
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Comment: C: Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
... Your suggestion has allowed me to load the "rnaseqGene" package into R version 3.4.4! Thanks for your help! H ...
written 18 months ago by harry.horsnell.170
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Comment: C: Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
... Of course, this is what appears in my console when using the command lines that is suggested on the workflow page linked in my original comment   > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help > biocLite('rnaseqGene') BioC_ ...
written 18 months ago by harry.horsnell.170
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Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
... Hi Everyone, New user and first time posting to Bioconductor support page. I am also fairly new to R software Come up with a slight issue loading the 'rnaseqGene' package from this workflow http://www.bioconductor.org/help/workflows/rnaseqGene/#abstract I am currently running the latest R versio ...
rnaseq rnaseqgene r 3.4.2 mac written 18 months ago by harry.horsnell.170 • updated 18 months ago by shepherl ♦♦ 1.6k

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