User: Emir

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Emir0
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Posts by Emir

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Comment: C: FPM value and batch correction
... Dear Gordon, Thanks for you reply. Please have a look at my comments below and let me know if I am more clear now. ...
written 5 days ago by Emir0
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Comment: C: FPM value and batch correction
... Dear Gordon, Thanks for you reply. Please have a look at my comments below and let me know if I am more clear now. ...
written 5 days ago by Emir0
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Comment: C: FPM value and batch correction
... Dear Michael and Gordon, Thanks a lot for your answers. Sorry if I was not that clear but yes for batch correcting my data I have used the log scaled data using vst and using this data, I have made heatmaps but I also thought it would be nice to have the count of genes as another plot beside my heat ...
written 5 days ago by Emir0
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FPM value and batch correction
... Dear all, I have a bulk-rna dataset which I have analyzed by DESEQ2 and I have batch corrected it using limma package and removeBatchEffect() function. I would like to calculate the FPM value for expression data through fpm() function of deseq2. I know it will use the raw data to calculate these va ...
limma deseq2 written 6 days ago by Emir0 • updated 5 days ago by Michael Love25k

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