User: shbrief

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shbrief10
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10
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New User
Location:
USA
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1 week, 5 days ago
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1 year, 1 month ago
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Posts by shbrief

<prev • 7 results • page 1 of 1 • next >
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ComplexHeatmap : can't find the arguments inherited from the previous version
... Hi! Several arguments I've been using with ComplexHeatmap::heatmap **v.1.99.7** are not available in **v.1.20.0**, and I can't find any new argument inheriting them. Does anyone know answer to this? Here are the arguments I used. >column\_names\_rot >heatmap\_width >heatmap ...
complexheatmap written 12 days ago by shbrief10 • updated 12 days ago by Zuguang Gu70
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Comment: C: Change the number of clusters with scater
... Thank you so much! I went though my code and found out that I skipped runTSNE on my updated run. Putting it back fixed the problem. Thanks again! ...
written 6 months ago by shbrief10
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Comment: C: Change the number of clusters with scater
... ...
written 6 months ago by shbrief10
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Comment: C: Change the number of clusters with scater
... Actually, I found one weird behavior after I made the above change. Whenever I applied plotTSNE() to my updated object, the location of clusters in the plot changes with different 'colour_by' argument. I have no idea why this is happening. Any advice to resolve this? ...
written 6 months ago by shbrief10
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Comment: C: Change the number of clusters with scater
... Thanks, Aaron! Changing k does the job I want. And yes, scran - not scater. Sorry.  ...
written 6 months ago by shbrief10
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Change the number of clusters with scater
... Can I pre-set the number of clusters with scater? I'm comparing scRNAseq analysis tools, and the same dataset clustered into 8 by Seurat is clustered into 20 by scater. For my purpose, I'd prefer to have fewer clusters than 20 and I can't figure out how to do it with scater. Thanks! ...
clustering scran scater scrnaseq written 6 months ago by shbrief10 • updated 6 months ago by Aaron Lun23k
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LaTeX Error with BiocWorkflowTools
... Hi! I'm trying to use BiocWorkflowTools package, but when I try knit, I got this error. output file: test_BiocWorkflowTools.knit.md `tlmgr search --file --global '/mathdesign.sty' cannot setup TLPDB in /home/sehyun/texmf at /usr/bin/tlmgr line 5604. ! LaTeX Error: File `mathdesign.sty' not found. ...
biocworkflowtools written 13 months ago by shbrief10 • updated 13 months ago by Mike Smith3.6k

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