User: gdeniz

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gdeniz0
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Posts by gdeniz

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makeBackground error message "Sequence only contain N's"
...   Hi, when I run the example in the makeBackground help file with the quick option set to "F", I get an error: Error in motifScores(bg, pwms, verbose = verbose) :    Sequence with index(es): 49007,49008,49171,49172,49173,49174 only contain N's. Please remove this sequence as the PWM score cannot ...
pwmenrich written 3 months ago by gdeniz0
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Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
... Hi, is there a way to cluster rows of the heatmaps produced by featureAlignedHeatmap() from the ChipPeakAnno package by signal from left to right? This is a nice way to show co-binding of a second TF at regions centered at binding sites for the first TF. Thanks for your input.  Best, Deniz     ...
chippeakanno heatmap written 3 months ago by gdeniz0 • updated 3 months ago by Ou, Jianhong1.1k

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