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Posts by gdeniz
... Hi, when I run the example in the makeBackground help file with the quick option set to "F", I get an error: Error in motifScores(bg, pwms, verbose = verbose) : Sequence with index(es): 49007,49008,49171,49172,49173,49174 only contain N's. Please remove this sequence as the PWM score cannot ...
... Hi, is there a way to cluster rows of the heatmaps produced by featureAlignedHeatmap() from the ChipPeakAnno package by signal from left to right? This is a nice way to show co-binding of a second TF at regions centered at binding sites for the first TF. Thanks for your input. Best, Deniz ...
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