User: mad6kj

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mad6kj0
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Posts by mad6kj

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Controlling for batch after Salmon-Tximport
... I have recently tried to implement the Samon-Tximport-DESeq2 pipeline with my latest RNA-Seq dataset however I have a problem with some of the downstream analysis and potential compatibility with other programs. I have found that the dataset has quite large batch effects and I am hoping to regress t ...
deseq2 wgcna rna-seq salmon written 10 months ago by mad6kj0 • updated 10 months ago by James W. MacDonald49k
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Post-processing RNA-Seq after tximport
... Firstly, this is my first time posting to this website, so I hope that I don't miss anything important. This is more of a question for advice of what to try next from people experienced with this type of analysis.  I have a moderately sized population cohort of RNA-Seq samples, ~400. As these have ...
deseq2 tximport salmon rna seq ruv-seq written 10 months ago by mad6kj0 • updated 10 months ago by Michael Love22k

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