User: Ashlynn

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Ashlynn0
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Posts by Ashlynn

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Comment: C: Bumphunting for longitudinal data
... Hi Tim,   Thanks a bunch for your help with this! I appreciate your guidance.   Best   Ash ...
written 17 months ago by Ashlynn0
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Comment: C: Bumphunting for longitudinal data
... Hi Tim, Thank you for your guidance. I am trying to identify DMRs for cases compared to controls, using age, sex, cell composition and smoking as covariates in my design matrix. As this was a study design where we collected samples from all cases and controls at two time points I would like to acco ...
written 17 months ago by Ashlynn0
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Comment: C: Paired samples and interactions models with bumphunter?
... Hi David and Magda,   Have either of you made any progress? I too am looking to use bumphunter in a similar way (for repeated measures). Thanks, Ash ...
written 17 months ago by Ashlynn0
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Bumphunting for longitudinal data
... Hello everyone, I'm working with some DNA methylation data and would like to use either Jaffe et al.'s bumphunter algorithm as implemented in the minfi package or the DMRcate package to identify differentially methylated regions. My study is a bit more complex as I have repeated measures (two time ...
minfi bumphunter dmr analysis dmrcate lmer written 17 months ago by Ashlynn0 • updated 17 months ago by Tim Peters80

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