User: Andrea Carenzo

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Posts by Andrea Carenzo

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Comment: C: Do the gene set statistics of the ROAST paper correspond to those implemented in
... Now I've got it, thanks again! ...
written 12 months ago by Andrea Carenzo0
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Comment: C: Does gene set statistics of the ROAST paper correspond to those implemented in t
... Thanks for the reply mr. Smyth. I have some other (and I think last) questions about this topic: shouldn't the "floormean" statistic for the mixed hypothesis be defined as: amodt <- pmax(abs(modt),sqrt(chimed)) and what's the meaning of the square-root of the median of the chi-squared distribu ...
written 13 months ago by Andrea Carenzo0
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
... Hello to everyone, I'm a mathematician and I'm writing a dissertation about the use of different gene set tests for the overrepresentation of lists of genes coming from several experiments. I'm only considering three (but very different) procedures: CAMERA, ROAST and ROMER, all coming from the limm ...

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