User: xncd

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xncd0
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Posts by xncd

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Comment: C: Better to use rlog or vst transformation for data quality assessment of differen
... Thanks Michael!  ...
written 10 days ago by xncd0
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Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
... Hello, I finished running DESeq2 on my dataset that includes 6 timepoints and 3 biological replicates per timepoint. I would like to run a PCA analysis for quality assessment but am unsure which count transformation method I should use, vst or rlog.  The calculated the size factors for my dataset ...
deseq2 rlog transformation vst quality assesment written 12 days ago by xncd0 • updated 10 days ago by Michael Love18k

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