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Posts by xncd
... Thanks Michael! ...
Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
... Hello, I finished running DESeq2 on my dataset that includes 6 timepoints and 3 biological replicates per timepoint. I would like to run a PCA analysis for quality assessment but am unsure which count transformation method I should use, vst or rlog. The calculated the size factors for my dataset ...
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