User: h.valipour.k

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Posts by h.valipour.k

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Comment: C: Three-factor design with DESeq2
... Dear Michael, Thank you for your advice in addressing my questions. as per your recommendation, when I applied DESeq function on the whole dds object created as above. dds_setA <- DESeq(dds_setA) # subset for species A dds_setB <- DESeq(dds_setB) # subset for species B dds_ALL ...
written 7 months ago by h.valipour.k0
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Three-factor design with DESeq2
... Hello everyone, Following reading the DESeq2 vignette and multiple posts in this forum, I still need to post my question regarding analysis design. In the experiment run by my colleagues, there are three factors: **Species** (A, B) **Treat** (Mock (M), Inoculation (I)) **Time** (T1,T2,T3,T4,T5,T6 ...
deseq2 time-course written 8 months ago by h.valipour.k0 • updated 8 months ago by Michael Love26k
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How to extract gene clusters (genes of similar pattern over time) once spline curves are fitted?
... Hi All, My question below might have been answered in support.bioconductor, please direct me to those of most relevant answers, in case if I overlooked them, although I've been through many posts.  Here is my Target file: Sample Species Condition Time Replicate Cond_Cult  ...
limma voom spline time course experiment gene cluster written 18 months ago by h.valipour.k0 • updated 18 months ago by Gordon Smyth39k

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