User: Ben Morris

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Ben Morris0
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University of Virginia
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Posts by Ben Morris

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Comment: C: Applying varianceStabilizingTransformation to log transformed RNA seq data from
... Sander, thanks for your response! I went through the files posted on the Datahub but I don't think the information I need is available there (I need raw, un-normalized RNAseq counts if possible). I was able to pull down un-normalized RNAseq counts for only 162 of the LUAD patients using Firehose but ...
written 8 weeks ago by Ben Morris0
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Applying varianceStabilizingTransformation to log transformed RNA seq data from cBioPortal
... I am currently working to analyze RNAseq patient data for lung cancer patients available through cBioPortal/TCGA. More specifically, I want to pass patient RNAseq count data to varianceStabilizingTransformation before doing additional downstream clustering. When I attempt to pass the data to VST, I ...
rnaseq deseq2 variancestabilizingtransformation cbioportal written 9 weeks ago by Ben Morris0 • updated 9 weeks ago by Sander Tan20

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