User: hks04180

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hks041800
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Posts by hks04180

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Comment: C: Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lu
... Thank You Gordon Smyth. It works for me now, earlier I was missing this expr="GSM". ...
written 18 months ago by hks041800
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Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
... I am trying to process GEO series, like GSE36411 data (Illumina data) using lumi package and limma package. I am getting following following error for above mentioned series and for many such series. > raw.data <- read.ilmn(files="GSE36411_non-normalized.txt") Reading file GSE36411_non-norma ...
limma lumi illumina gene expression data written 18 months ago by hks041800 • updated 18 months ago by Gordon Smyth39k
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Comment: C: Targets.txt file missing in agilent GEO data. How do I preprocess raw Agilent fi
... Thank You James. Yeah most of part I already solved. I was confused with targets.txt file.  ...
written 18 months ago by hks041800
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Targets.txt file missing in agilent GEO data. How do I preprocess raw Agilent file of GEO data or how to makethe expression matrix step by step from GEO raw data (Agilent array data)
... Hello all, I downloaded the raw data for the Agilent from GEO (), but I do not know how to build the expression matrix step by step. Can anyone of you help me? Although I have tried limma package for the same.   targetinfo <- readTargets("Targets.txt", sep="\t") But problem is Targets.txt f ...
microarray limma geo agilent microarrays written 18 months ago by hks041800 • updated 18 months ago by James W. MacDonald52k

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