User: xiaozhuo

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xiaozhuo0
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Posts by xiaozhuo

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Comment: C: DESeq2 for Ribosomal profiling analysis [two-factor designs]
... hi Mike,  Great! Thanks for your help as always! For "grouping" function, I notice you had another helpful post before: https://support.bioconductor.org/p/67600/#67612 (DESEq2 comparison with mulitple cell types under 2 conditions). Following this post and reply, here is the code for "grouping" and ...
written 12 weeks ago by xiaozhuo0
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DESeq2 for Ribosomal profiling analysis [two-factor designs]
... Hi Mike, I am using DESeq2 to analyze differential translation efficiency (TE) from Ribosomal profiling (Riboseq) and RNAseq datasets. Translation efficiency = normalized Riboseq read density / normalized RNASeq read density. I have four groups of samples with duplicates each group for both Riboseq ...
deseq2 ribosome profiling written 12 weeks ago by xiaozhuo0 • updated 12 weeks ago by Michael Love19k

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