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Posts by xiaozhuo
... hi Mike, Great! Thanks for your help as always! For "grouping" function, I notice you had another helpful post before: https://support.bioconductor.org/p/67600/#67612 (DESEq2 comparison with mulitple cell types under 2 conditions). Following this post and reply, here is the code for "grouping" and ...
... Hi Mike, I am using DESeq2 to analyze differential translation efficiency (TE) from Ribosomal profiling (Riboseq) and RNAseq datasets. Translation efficiency = normalized Riboseq read density / normalized RNASeq read density. I have four groups of samples with duplicates each group for both Riboseq ...
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