User: Mbosio85

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Mbosio850
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Posts by Mbosio85

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Comment: C: Deseq2 problem visualizing gene expression with batch corrected values
... Thanks a lot Mike for your answer. I will give these alternative a try, to see if they can find some genes both rejecting the null hypothesis, and showing a more easily interpretable behavior : )    ...
written 11 months ago by Mbosio850
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Comment: C: Deseq2 problem visualizing gene expression with batch corrected values
... Hello, thanks a lot for the prompt reply. Here the image of the plot counts : plotCounts(dds=dds,gene="ENSG00000171819.4", intgroup= 'STATUS')  https://drive.google.com/open?id=1i16bFQgbVxC9775Xya5eMtpwhyc8zK8d  And here the results of the mean VST values in the two groups: > batch_removed_t ...
written 11 months ago by Mbosio850 • updated 11 months ago by Michael Love23k
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Deseq2 problem visualizing gene expression with batch corrected values
... Hello, I am analyzing a large cohort (1000+ samples) for differential expression analysis. I am using Deseq2 to process raw counts from  samples correcting by two confounding factors (namely sex and histology origin). As output we obtain a shortlist of interesting candidates with strong adjusted ...
visualization limma deseq2 differential expression written 11 months ago by Mbosio850 • updated 11 months ago by Michael Love23k

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