User: Giuseppe

gravatar for Giuseppe
Giuseppe20
Reputation:
20
Status:
New User
Location:
Last seen:
1 year ago
Joined:
1 year, 3 months ago
Email:
g*******************@gmail.com

Posts by Giuseppe

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
262
views
0
answers
Multiple alignment of big DNA sequences files
... Hi everybody, I have 12 fasta files of DNA sequences that I downloaded from NCBI. Every file contains ~ 30000 rows and ~2MLN of characters. I have Ubuntu 18.04 VPS with 32 GB of RAM, 8 CPUs. I want multiple alignment of sequences with "msaClustalOmega" function of the Bioconductor package msa. I e ...
genome multiplealignment written 13 months ago by Giuseppe20
0
votes
1
answer
373
views
1
answers
Comment: C: Download TCGA dataset like a S4 object
... thank you so much! The Only problem is that download Methylation dataset is very slow! And the S4 object occupies so much memory ...
written 14 months ago by Giuseppe20
1
vote
1
answer
373
views
1
answers
Comment: C: Download TCGA dataset like a S4 object
... Thank you very much for your support! I have last question.. I executed this instruction: > experiments(SKCM) ExperimentList class object of length 1: [1] SKCM_Methylation-20160128: SummarizedExperiment with 485577 rows and 475 columns I want to convert ExperimentList class to a data frame. How c ...
written 14 months ago by Giuseppe20
1
vote
1
answer
373
views
1
answers
Comment: C: Download TCGA dataset like a S4 object
... Thank you Mario for your answer. I want to download the following dataset : https://xenabrowser.net/datapages/?dataset=TCGA.SKCM.sampleMap%2FHiSeqV2_PANCAN&host=https%3A%2F%2Ftcga.xenahubs.net&removeHub=https%3A%2F%2Flocal.xena.ucsc.edu%3A7223&removeHub=https%3A%2F%2Fucscpublic.xenahu ...
written 14 months ago by Giuseppe20
6
votes
1
answer
373
views
1
answer
Download TCGA dataset like a S4 object
... Hi all, I'm making a function that uses input TCGA datasets. I know that for the purpose of reproducibility, inputs need to be BioC objects, and not text files. My question is: is there any package that allows me download TCGA datasets like a BioC objects (S4) ? Thank you so much! ...
tcga dataset written 14 months ago by Giuseppe20 • updated 14 months ago by mario.zanfardino150

Latest awards to Giuseppe

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 294 users visited in the last hour