User: liushang

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liushang0
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Posts by liushang

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Comment: C: What causes this DESeq2 error at "fitting model and testing"?
... I also meet the same error: error: matrix multiplication: incompatible matrix dimensions: 1176x590 and 0x1 Error in fitBeta(ySEXP = ySEXP, xSEXP = xSEXP, nfSEXP = nfSEXP, alpha_hatSEXP = alpha_hatSEXP, : matrix multiplication: incompatible matrix dimensions: 1176x590 and 0x1 I mention it that ...
written 25 days ago by liushang0
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Comment: C: What causes this DESeq2 error at "fitting model and testing"?
... Hi, Michael I would like to request how to use vst() functions before estimateDispersions step. When the vst() function or varianceStabilizingTransformation() was used, it return a DESeqTransform. I mention it that DESeqTransform can not been used to difference expression. Thanks very much! ...
written 25 days ago by liushang0
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A question about DEXSeq of estimateDispersions
... HI, I meet an error when I run a 119311* 749 dataframe: error: matrix multiplication: incompatible matrix dimensions: 1498x751 and 0x1 Error in fitBeta(ySEXP = ySEXP, xSEXP = xSEXP, nfSEXP = nfSEXP, alpha_hatSEXP = alpha_hatSEXP, : matrix multiplication: incomp ...
dexseq written 28 days ago by liushang0
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A question about log_transformed
... I would like you to tell me why the filtered expression matrix M should log-transformed after adding a pseudo-count of 1: M’ = log2(M + 1). Thank you!! ...
sc3 written 14 months ago by liushang0 • updated 14 months ago by James W. MacDonald51k

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