User: fwere

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fwere10
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Posts by fwere

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Comment: C: getGEO function doesn't download the expression data
... It works!! I don't know why pkg rlang got attached, will try to close it! Thank you very much for your help,, Felipe ...
written 16 months ago by fwere10
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Comment: C: getGEO function doesn't download the expression data
... Sorry, this is the output I get from the last command I mentioned: > gse[[1]] ExpressionSet (storageMode: lockedEnvironment) assayData: 25697 features, 23 samples   element names: exprs protocolData: none phenoData   sampleNames: GSM2142852 GSM2142853 ... GSM2142874 (23 total)   varLabels: title ...
written 16 months ago by fwere10
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Comment: C: getGEO function doesn't download the expression data
... Thank you Axel, But the first element in the list (the series_matrix) is still empty: > str(exprs(gse[[1]]))  language gse[[1]] > str(expr(gse$GSE81096_series_matrix.txt.gz))  language gse$GSE81096_series_matrix.txt.gz > gse[[1]] gse[[1]] And if I replace GSE81096 with other datasets ...
written 16 months ago by fwere10
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getGEO function doesn't download the expression data
... Dear All, I am having some issues getting the expression data from GEO with "getGEO" from GEOquery package. I have tried with several different GEO microarray datasets, and had the same problem. Just a couple of weeks ago I successfully downloaded the same datasets from GEO (including the expressi ...
geoquery written 16 months ago by fwere10 • updated 16 months ago by Axel Klenk940

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