User: franceschini.gianmarco

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Posts by franceschini.gianmarco

<prev • 6 results • page 1 of 1 • next >
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ggbio labels with ggrepeal on circos plot
... Good morning, I am trying to plot a circosplot using ggbio, and I would like to label di elements along the circle using ggrepel as they often overlap is I add them as text with the corresponding function. I was wandering if there's a way to do so: it would be sufficient to retrieve plot coordinate ...
ggbio R graphics written 12 months ago by franceschini.gianmarco0
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Comment: C: TCGA biolinks - Samples with multiple profiles
... Thank you very much for both your answers, that was exactly what I needed! Best ...
written 13 months ago by franceschini.gianmarco0
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TCGA biolinks - Samples with multiple profiles
... Good morning, I am struggling to complete a simple task using TCGA related packages. I would need to obtain a manifest with all TGCA sample IDs (normal and primary tumor) and patient IDs which satisfy the following conditions: Whole exome sequencing + DNA methlation profile (450k) + Gene expressi ...
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Comment: C: Gviz change color of groups
... Thank you for your answer, I don't know how I managed to miss this very basic attempt ...
written 14 months ago by franceschini.gianmarco0
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Answer: A: Gviz change color of groups
... The best workaround I've found is to use overalyed tracks, plotting for each single track only one element, being points or line. In that way the color can be specified for each track. However I am still not able to set different alphas for overlaying tracks, probably because I'm missing something. ...
written 14 months ago by franceschini.gianmarco0
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Gviz change color of groups
... I am trying to plot two groups within a single track using Gviz. sample_tissue = DataTrack(data = all_beta, start = sg_tissue$start, end = sg_tissue$end, chromosome = chr, genome = gen, name = "Tissue Beta", groups = tissue_all_class, deg ...
gviz gviz-package written 15 months ago by franceschini.gianmarco0 • updated 14 months ago by florian.hahne@novartis.com1.6k

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