User: nilaycan

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nilaycan0
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Posts by nilaycan

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Comment: C: MethylKit DSS Package
... Dear Akalin, Thanks for your response.  Best Regards, Nilay ...
written 16 months ago by nilaycan0
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MethylSig is not giving DMRs with no replicates
... Hello all, I am trying to run MethylSig with my no biological or technical replicate data-sets. In many forums and their manual also, they declared that if you do not have "any replicates", you should use Fisher's exact test instead of t-test. I changed properly all the functions and parameters acc ...
dmr no replicates methylsig written 16 months ago by nilaycan0
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BSmooth does give DMRs without no replicate data sets
... Hello all, I am trying to run BSmooth with my no biological or technical replicate data-sets. In many forums and their manual also, they declared that if you do not have "any replicates", you should use Fisher's exact test instead of t-test. I changed properly all the functions and parameters accor ...
bsmooth without replicate dimension written 16 months ago by nilaycan0
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MethylKit DSS Package
... Dear Sir/Madam, I have tried Methylkit with many datasets and it always worked well using the function calculateDiffMethDSS. However, I am trying to run a data set with no replicates and it crashed when running calculateDiffMethDSS. It returns the error: Error in rowMeans(p) : 'x' must be an arra ...
methylation R bioconductor methylkit written 16 months ago by nilaycan0 • updated 16 months ago by altuna akalin20

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