User: jaleh.amo

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jaleh.amo0
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Posts by jaleh.amo

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RankProd RP function length error
...   I am doing a RankProd for my expression set  my eset has 7 observation with 6 controls and 1 treatment my cl is 0 0 0 0 0 0 1 when I run the code RP.out = RP(exprs(eset), cl, logged=TRUE, rand=123) I get this error  Error in vector("list" , nrow(gr2)) : invalid 'length' argument I am not ...
rankprod rp gr2 written 9 months ago by jaleh.amo0 • updated 9 months ago by Michael Love23k
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Comment: C: error reading GSE using getGEO()
... Someone suggested I use this upgrade and after that it worked.   biocLite("BiocUpgrade") ...
written 9 months ago by jaleh.amo0
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Comment: C: error reading GSE using getGEO()
... This is the one after running the library. I also fixed the one I posted originally    > sessionInfo() R version 3.5.0 (2018-04-23) Platform: x86_64-redhat-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Matrix products: default BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so locale: [ ...
written 9 months ago by jaleh.amo0
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Comment: C: error reading GSE using getGEO()
... I have been trying for the past 2 days. That's why I am not sure if the issue is our version of R at work or something else! I see getGEO() works for others! ...
written 9 months ago by jaleh.amo0
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error reading GSE using getGEO()
... I am trying to read a GSE file and getting this following error. gg = getGEO("GSE6929", GSEMatrix = TRUE) but I receive the following error https://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6929/matrix/ OK Found 2 file(s) /geo/series/GSE6nnn/GSE6929/ Error in file(con, "r") : cannot open the c ...
R geo getgeo written 9 months ago by jaleh.amo0

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