User: morteza.hadizade

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Posts by morteza.hadizade

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Comment: C: remove NAs values from gset
... Thank you so much for your valuable guidance, your answer was reasonable and accurate. ...
written 6 days ago by morteza.hadizade10
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Comment: C: Compare in cont.matrix part
... Thank you for your help ...
written 7 days ago by morteza.hadizade10
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Comment: C: Compare in cont.matrix part
... Thank you for your answer, but LogFC is important in our results final (up and down-regulated genes), if I remove the single quotes, LogFC is removed from the analysis result. So I have to compare two groups in cont.matrix. ...
written 7 days ago by morteza.hadizade10
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Compare in cont.matrix part
... Hi everyone, In the cont.matrix, can I compare each individual group separately (Not altogether)? Thanks you very much for your attention.   cont.matrix<- makeContrasts (TGFbeta-Control, levels=design) or cont.matrix<- makeContrasts (SSc – Control, levels=design) instead cont.matrix< ...
microarray R written 8 days ago by morteza.hadizade10 • updated 7 days ago by Gordon Smyth34k
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remove NAs values from gset
... Hi everyone Sometimes in microarray analysis, “ex” matrix is contained any NA values, I remove NAs with “na.omit” command, after removing NAs from “ex” matrix, do I need to remove NAs from “gset”??? I would be very pleased if you could guide me.   gset <- getGEO(dataset, GSEMatrix =TRUE, Anno ...
microarray R written 8 days ago by morteza.hadizade10 • updated 7 days ago by James W. MacDonald47k

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