User: brendan.innes

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2 months ago
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10 months, 2 weeks ago
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b************@mail.utoronto.ca

Posts by brendan.innes

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Comment: C: SetMethod to dispatch on class in unattached package
... And if the solution is to suppress the warning, how exactly would I do that? Because neither options(warn=-1) and suppressWarnings() seems to work. Which is probably because there's a less dumb way to do this, I hope! ...
written 4 months ago by brendan.innes10
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SetMethod to dispatch on class in unattached package
... Hi friendly Bioc gang! I'm struggling with what seems like a silly problem. I'm trying to write a simple wrapper S4 generic that accesses the data slot of various S4 objects (seurat and SingleCellExperiment objects). So the generic is: setGeneric("getGE",function(x) standardGeneric("getGE")) ...
summarizedexperiment s4 methods written 4 months ago by brendan.innes10 • updated 4 months ago by Aaron Lun24k
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Answer: A: SYMBOL is not the official MGI gene symbol?
... It seems that this is limited to the mitochondrial genome, and is due to NCBI's naming decisions, as explained here: https://support.bioconductor.org/p/54320/ ...
written 10 months ago by brendan.innes10
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SYMBOL is not the official MGI gene symbol?
... Hi, I'd like to use annotationDbi to map various gene IDs (entrez,ensembl, etc) to official gene symbols quickly, but some of the gene symbols in the org.Mm.eg.db database aren't the official MGI gene symbols.  For example, mt-Cytb (entrez # 17711) has the gene symbol CYTB according to org.Mm.eg.db ...
annotationdbi org.mm.eg.db written 10 months ago by brendan.innes10 • updated 10 months ago by James W. MacDonald50k

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Scholar 10 months ago, created an answer that has been accepted. For A: SYMBOL is not the official MGI gene symbol?

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