User: deut2016

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deut20160
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Comment: C: Seurat/DESeq2 - single cell RNA-seq differential expression
... Thank you! I had seen in this paper by Soneson&Robinson https://www.nature.com/articles/nmeth.4612 that DESeq2 was employed, however the number of cells were much lower. In addition, input used was transcripts per million, while I think Seurat uses raw counts. In any case, I will look at the rec ...
written 16 months ago by deut20160
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Seurat/DESeq2 - single cell RNA-seq differential expression
... Hi all, I am approaching the analysis of single-cell RNA-seq data. I have seen that Seurat package offers the option in FindMarkers (or also with the function DESeq2DETest) to use DESeq2 to analyze differential expression in two group of cells. Assuming I have group A containing n_A cells and gro ...
deseq2 seurat written 16 months ago by deut20160 • updated 16 months ago by Michael Love26k

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Popular Question 16 months ago, created a question with more than 1,000 views. For Seurat/DESeq2 - single cell RNA-seq differential expression

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