User: fargo

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Comment: C: DESeq2 multifactor design, interpreting interaction names
... I agree that the alternate design is easier to understand. I guess I am still confused what exactly the interaction coeffcients are comparing against.  After running the alternate design my resultsNames(dds) are: [1] "Intercept" "treatment_low_vs_none" "treatment_high_vs_none" "treatmentnone. ...
written 5 weeks ago by fargo0
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DESeq2 multifactor design, interpreting interaction names
... Hello, I want to determine if there are genes that are differentially expressed between males and females for each treatment (none, low, and high). For gender my reference level is set as female and for treatment my reference level is set as none. Samples and script below. sample treat ...
deseq2 interactions multifactorial design written 5 weeks ago by fargo0 • updated 5 weeks ago by Michael Love19k

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