User: rogangrant
rogangrant • 0
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Posts by rogangrant
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... I re-ran the alignment with STAR yesterday, and the output confirms that multi-mapping is the issue, thank you! Still left to wonder why multi-mapping is higher in data from stress conditions, but that's probably more of a biological question. Now I just need to find a way to rescue some of these mu ...
written 14 months ago by
rogangrant • 0
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... I am currently trying to optimize RNAseq analysis for stress conditions, in which splicing dysregulation (among other issues) is a major obstacle to accurate mapping. I therefore thought to try genome/split-read alignment over direct transcriptome mapping. Using the subread package with existing hea ...
written 14 months ago by
rogangrant • 0
• updated
14 months ago by
Gordon Smyth ♦ 38k
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