User: sbbinfo90

gravatar for sbbinfo90
sbbinfo900
Reputation:
0
Status:
New User
Last seen:
11 months ago
Joined:
1 year ago
Email:
s********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by sbbinfo90

<prev • 22 results • page 1 of 3 • next >
0
votes
0
answers
247
views
0
answers
Comment: C: Vidger library error
... [39] annotate_1.59.1             IRanges_2.15.17             [41] ggplot2_3.0.0               SummarizedExperiment_1.11.6 [43] nnet_7.3-12                 BiocGenerics_0.27.1         [45] lazyeval_0.2.1              survival_2.42-6             [47] magrittr_1.5                crayon_1.3.4        ...
written 12 months ago by sbbinfo900
0
votes
0
answers
247
views
0
answers
Comment: C: Vidger library error
... loaded via a namespace (and not attached):  [1] Biobase_2.41.2              tidyr_0.8.1                  [3] edgeR_3.23.3                bit64_0.9-7                  [5] splines_3.5.1               Formula_1.2-3                [7] assertthat_0.2.0            stats4_3.5.1                 [9] lat ...
written 12 months ago by sbbinfo900
0
votes
0
answers
247
views
0
answers
Comment: C: Vidger library error
... Sure, > sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS: /home/sbharti/Softwares/R_351/lib64/R/lib/libRblas.so LAPACK: /home/sbharti/Softwares/R_351/lib64/R/lib/libRlapack.so locale:  [1] ...
written 12 months ago by sbbinfo900
0
votes
0
answers
350
views
0
answers
Comment: C: WGCNA Co-expression network analysis on cuffdiff output
... Hello Peter, I have 8 samples (1 control and 7 infection stages) and my objective is to study genes co-expression amongst all pairwise comparisons. I already have Differentially expressed genes from Cuffdiff for all comparisons also. Can you please guide how to perform WGCNA on such data?   There ...
written 12 months ago by sbbinfo900
0
votes
1
answer
841
views
1
answers
Comment: C: How to get an output from DESeq2 to be used in WGCNA package
... Hi Peter, Can you please send link for this tutorial https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/faq.html as it is not available now? ...
written 12 months ago by sbbinfo900
0
votes
0
answers
350
views
0
answers
WGCNA Co-expression network analysis on cuffdiff output
... Hello, I am struggling with running WGCNA on cuffdiff output consisting of 28 pairwise comparisons (Time series Analysis). Can someone suggest way out to perform WGCNA for each comparisons separately? Thanks! ...
wgcna cuffdiff written 12 months ago by sbbinfo900
0
votes
1
answer
253
views
1
answers
Comment: C: Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
... Hello James, Can you comment on this thread https://support.bioconductor.org/p/113034/ ? ...
written 12 months ago by sbbinfo900
0
votes
0
answers
247
views
0
answers
Vidger library error
... Hello, I am using VIDGER from bioconductor but it shows an error: vsMAMatrix(data = cuffdiffdata, d.factor = NULL, type='cuffdiff',padj = 0.05, y.lim = NULL, lfc = NULL, title = TRUE, legend = TRUE,grid = TRUE, counts = TRUError in `$<-.data.frame`(`*tmp*`, "id_x", value = "24hpi") :   replace ...
vidger written 12 months ago by sbbinfo900
0
votes
2
answers
774
views
2
answers
Comment: C: [maSigPro] two color array analysis of time series in different cell lines.???
... $groups.vector  [1] "X12hours_post_infectionvsControl" "X24hours_post_infectionvsControl"  [3] "X2days_post_infectionvsControl"   "X4days_post_infectionvsControl"    [5] "X6days_post_infectionvsControl"   "X8days_post_infectionvsControl"                          ......[63] ...
written 12 months ago by sbbinfo900
0
votes
2
answers
774
views
2
answers
Comment: C: [maSigPro] two color array analysis of time series in different cell lines.???
... $edesign    Time Replicate Control X12hours_post_infection X24hours_post_infection X2days_post_infection 1     0         1       1                       0                       0                     0 2     0         2       1                       0                       0                     0 3   ...
written 12 months ago by sbbinfo900

Latest awards to sbbinfo90

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 174 users visited in the last hour