User: vonskopnik

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vonskopnik10
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10
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4 months, 1 week ago
Joined:
7 months, 2 weeks ago
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Posts by vonskopnik

<prev • 5 results • page 1 of 1 • next >
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How to get popStats from wsp
... Hello everybody. Is it possible to extract the population statistics (more precisely the event counts per gate) from flowjo's .wsp without parsing it to a gating set? And if yes, how? I think the information should be present in XML-code behind the wsp. The reason is that we have a workspace which ...
flowworkspace written 4 months ago by vonskopnik10 • updated 4 months ago by Jiang, Mike1.2k
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Comment: C: FlowJo workspace cannot be parsed with flowworkspace
... Thank you very much Mike. That worked for me! Unfortunately, now another error pops up while parsing the Workspace: Creating ncdfFlowSet... All FCS files have the same following channels: Time FSC-A SSC-A b-LP502 530/30-E-A PE-A b-LP655 LP670-B-A b-LP735 780/60-A-A r-660/20-C-A r-LP685 720/30-A-A v ...
written 7 months ago by vonskopnik10
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FlowJo workspace cannot be parsed with flowworkspace
... Hello Community, my standard procedure of parsing a FlowJo workspace has failed for unknown reason. Well, there is an error message but don't why it pops up, since I am doing everything similar to previous analyses. I have used another FlowCytometer this time but this should not be a problem I gues ...
flowworkspace parseworkspace written 7 months ago by vonskopnik10 • updated 7 months ago by Jiang, Mike1.2k
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Comment: C: Modifying or writing a FCS file in R using the FlowCore package
... Great, that seems indeed to be rather useful. Is it also possible to remove or add columns / channels completely? ...
written 7 months ago by vonskopnik10
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Modifying or writing a FCS file in R using the FlowCore package
... Dear Community, I am interest in how to modify of write a FCS file in R, in a way that I edit a flowframe and then save it to a FCS file. I think writing it from scratch is harder, so I would start with an existing file and modify it. What I would like to do is to enter scRNAseq data into the FCS ...
flowcore flow cytometry fcs flowframe written 7 months ago by vonskopnik10

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