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Posts by Ir5sE
Comment: C: Multi-factor analysis Deseq2
... Thank you so much Michael for your answer! I just want to make sure I'm correct with building and interpreting my contrasts. 1) Cultivar difference at a time point reference level is cltv1: difference between cultivars at time point 3 results(dds, contrast = list(c("cltv2","cltv2.time3")), test ...
... Hi Mike and community, I’m using theDESeq2 package for my RNA-seq analysis. I would like to get feedback on the choice of my models and applied contrasts. If there is a better model to answer our questions, I would appreciate any suggestions. I use a 3-level factor analysis: Cultivar factor w ...
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