User: Ir5sE

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Ir5sE0
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Posts by Ir5sE

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Comment: C: Multi-factor analysis Deseq2
... Thank you so much Michael for your answer! I just want to make sure I'm correct with building and interpreting my contrasts. 1) Cultivar difference at a time point reference level is cltv1: difference between cultivars at time point 3 results(dds, contrast = list(c("cltv2","cltv2.time3")), test ...
written 12 days ago by Ir5sE0
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Multi-factor analysis Deseq2
...   Hi Mike and community, I’m using theDESeq2 package for my RNA-seq analysis. I would like to get feedback on the choice of my models and applied contrasts. If there is a better model to answer our questions, I would appreciate any suggestions.  I use a 3-level factor analysis: Cultivar factor w ...
deseq2 contrast ltr written 22 days ago by Ir5sE0 • updated 20 days ago by Michael Love20k

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