User: shengqh

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shengqh0
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Posts by shengqh

<prev • 6 results • page 1 of 1 • next >
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Comment: C: ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
... The problem is caused by single end data which would not return fragment length. I fixed it in my fork project. And I contacted the author and hope they will fix it in their next release. https://github.com/shengqh/ChIPQC ...
written 5 days ago by shengqh0
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Comment: C: Integer overflow issue with ChIPQC
... The problem is caused by single end data which would not return fragment length. I fixed it in my fork project. And I contacted the author and hope they will fix it in their next release. https://github.com/shengqh/ChIPQC ...
written 5 days ago by shengqh0
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Comment: C: ATAC-Seq peaks quality control with ChIPQC package, but getting error
... The problem is caused by single end data which would not return fragment length. I fixed it in my fork project. And I contacted the author and hope they will fix it in their next release. https://github.com/shengqh/ChIPQC ...
written 5 days ago by shengqh0
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Comment: C: ChIPQC: issues with report generation and QC metrics
... You are correct. The problem is caused by single end data which would not return fragment length. I fixed it in my fork project. But I hope the author will fix it in future. https://github.com/shengqh/ChIPQC ...
written 5 days ago by shengqh0
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Comment: C: ChIPQC error: 'names' attribute [9] must be the same length as the vector [7]
... I fixed the problem in my forked one tonight, you may install it and have a try. I will contact author to fix the bug later. https://github.com/shengqh/ChIPQC ...
written 6 days ago by shengqh0
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Unbalanced experimental design of DESeq2
... We used DESeq2 a lot at our research projects. Recently I was asked about specific experimental design for DESeq2.   We have 10 subjects that we will perform surgery on and measure mRNAs before surgery, during surgery, and 3 follow up time points. All 10 subjects were collected at the pre, during ...
deseq2 written 12 months ago by shengqh0 • updated 12 months ago by Michael Love25k

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