User: molly_the_minotaur
molly_the_minotaur • 20
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Posts by molly_the_minotaur
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... Hi Tom,
Could you post the potential reason for why dup% is 0? My input files are BAM files. Both QC report from before and after I performed the deduplication using fastx_collapser from FASTX-Toolkit showed the same results.
Thanks!
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written 5 weeks ago by
molly_the_minotaur • 20
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C: ChIPQC - can't read in bam files
... I can't get the ChIPQC installed on the server R 3.5 because anaconda conflicts. There are many dependencies couldn't be installed. Do you think the errors in this post are due to the older R version 3.4.1?
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written 9 weeks ago by
molly_the_minotaur • 20
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C: ChIPQC - can't read in bam files
... I do have the index files (.bai) under the same folder. I have R 3.5 installed on a server that I’ll test the same function again this afternoon. Thanks for the suggestion @James
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written 9 weeks ago by
molly_the_minotaur • 20
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Having trouble to get the ChIPQC to work properly. My ultimate goal is to have the html report generated using ChIPQCreport().
I read in the bam files through dba function in the DiffBind package. All went well and I was able to run all DiffBind functions.
Using the same sample sheet and dba ...
written 9 weeks ago by
molly_the_minotaur • 20
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