User: molly_the_minotaur

Reputation:
20
Status:
New User
Location:
Last seen:
6 months, 2 weeks ago
Joined:
7 months, 1 week ago
Email:
y***@me.com

Posts by molly_the_minotaur

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
414
views
1
answers
Comment: C: ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is I
... Hi Tom,  Could you post the potential reason for why dup% is 0? My input files are BAM files. Both QC report from before and after I performed the deduplication using fastx_collapser from FASTX-Toolkit showed the same results.  Thanks! ...
written 6 months ago by molly_the_minotaur20
0
votes
0
answers
322
views
0
answers
Comment: C: ChIPQC - can't read in bam files
... I can't get the ChIPQC installed on the server R 3.5 because anaconda conflicts. There are many dependencies couldn't be installed. Do you think the errors in this post are due to the older R version 3.4.1?    ...
written 7 months ago by molly_the_minotaur20
1
vote
0
answers
322
views
0
answers
Comment: C: ChIPQC - can't read in bam files
... I do have the index files (.bai) under the same folder. I have R 3.5 installed on a server that I’ll test the same function again this afternoon. Thanks for the suggestion  @James  ...
written 7 months ago by molly_the_minotaur20
2
votes
0
answers
322
views
0
answers
ChIPQC - can't read in bam files
...     Having trouble to get the ChIPQC to work properly. My ultimate goal is to have the html report generated using ChIPQCreport(). I read in the bam files through dba function in the DiffBind package. All went well and I was able to run all DiffBind functions. Using the same sample sheet and dba ...
chipqc chipqcreport written 7 months ago by molly_the_minotaur20

Latest awards to molly_the_minotaur

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 214 users visited in the last hour