User: fotakisg

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Posts by fotakisg

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Comment: C: Correct formulation of contrasts of interest regarding an RNA-Seq gene expressio
... Dear Aaron, Thank you for your reply and your input, especially for the average effect of obesity between patient and normal samples. Best regards, Fotakis Georgios ...
written 28 days ago by fotakisg0
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Correct formulation of contrasts of interest regarding an RNA-Seq gene expression analysis with edgeR
... Dear Bioconductor Support Site, I'm currently working with an RNA-Seq dataset, which consists of 84 samples(Collaborative Cross mice genetic panel of normal, diabetic and obese phenotypes).  My code for the analysis used so far is the following: head(sampleInfo) # the phenotype data information  ...
rnaseq edger design and contrast matrix multifactorial design written 4 weeks ago by fotakisg0 • updated 28 days ago by Aaron Lun21k

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